PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0612s0056.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 283aa    MW: 31769.3 Da    PI: 4.435
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0612s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.2e-2013103199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv++++++  s  + +p +f+e+   +   + t +l+ + gr W+v++  +k ++++++t+GW++F+++++L +g+f++F +dg+++f
  Cagra.0612s0056.1.p  13 FFKVFLSESA--SESFAIPLSFMEHLADP--LPNTAKLQGTGGRDWTVNM--TKIRDGVYFTAGWSKFAQDHELVDGEFLTFVYDGHRTF 96 
                          8999955555..5558*******666655..889****************..********************************998777 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                             v+vf++
  Cagra.0612s0056.1.p  97 --EVSVFSR 103
                          ..8888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.07E-1911102No hitNo description
SuperFamilySSF1019361.47E-2211103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-2311103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.52111104IPR003340B3 DNA binding domain
SMARTSM010196.4E-2113104IPR003340B3 DNA binding domain
PfamPF023621.2E-1713103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-5184279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-7184278IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.11188277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDEHDDDVLL PRFFKVFLSE SASESFAIPL SFMEHLADPL PNTAKLQGTG GRDWTVNMTK  60
IRDGVYFTAG WSKFAQDHEL VDGEFLTFVY DGHRTFEVSV FSRLGCKETR AEVEAIAVDG  120
SSSDSDGSSS DSEEEKELSM DIYGDTSLGE DEEISQSLYP LEDEETESDA AAVVEGNLDI  180
EALTNPHFST TLKNRIYELL IPANVVKENK LTFGDSVKYI DGEGTLVGLR GKWADDRICF  240
KGWDRICRRN RLKKHQDTVE CELLHDRNKV HSIRVHIMRG TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-211210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293000.10.0hypothetical protein CARUB_v10019277mg
SwissprotQ8LAV51e-131REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM70.0R0HPM7_9BRAS; Uncharacterized protein
STRINGscaffold_502422.11e-142(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-128B3 family protein